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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015937830.1_cds_XP_016482950.1_74118
CDS Infomation

[gene=LOC107803694] [db_xref=GeneID:107803694] [protein=RNA polymerase sigma factor sigC-like isoform X2] [protein_id=XP_016482950.1] [location=complement(join(18838..19116,19670..19870,19971..20111,21327..21557,21646..22212,22324..22481,24574..24661))] [gbkey=CDS]
Sequence

ATGGGTTTTAGGCTGCACCTCAAATGGGGTTTCTCTGTCCAACCCCCTTTCTCCTCCAAC
TCATCAGCATGGCCTTCTTCACATTCTTTCAAAGGAAAGGAGGCTTTATACGATCCAGCT
CGGTCTCTCAAACCTTTTATCAACGGGGACTGTGAACCTTCACATAGTGATCCTTTCAGA
GTGCGGACTTGTTTATCTGACCCCCAACTGTGGACGAGTGATATATCAGTAACTACAGAA
ATAAAGACACGAATCGGCAGAGGATCCCCTAGCAATATATATGGAGATATTGGCAGTGAT
AAGACTGGGATATCACCTGATGGGGAAAAACCATCATATTTAAGCACAACCAGAGCCCCT
CATTTTAGTTTACTAATGAAAAATATTGATTTGCTGGAAAACATGTTTGCTGATTCAGAG
ATGTCAAGATTAGAAAACGATATTCTGGTGCAACTAGAAAAGCTTGGAGCTTTAGAATTC
TTTCATAGTCGTCTCTCAAGAACACTTCATTCTACTTCTCCTGAAGTGCTTGACGTGCCA
AGGGAGCTTGTTGAAGAAATTGAAAAAGATGACCTTGTTGGAAATGGAATAGATAAGGTA
GTCGTACGTTCTAGAAAAAAGCAAGAGCGGAATTCAAGGAGAAACAGAGCATCCGGAATT
GCTAATGACATTATTACAGTGCATCCACATACCAAAAACATCCAGGAGGATATGCAACAG
CCAAAGTTTTATTCTGGGAAAAGAACACATGCTTCTAGAAATAAAAGACAGAAGATCGCT
AAGAATGAGGCAGAAATGTCAAGAGGTGTTAAGCTGGTGGCCGAACTGGAAAGAATCAGG
TCAATCCTTGAAGAAGAAACTGGTCGAGTAGCTAGTTTCAGTAGCTGGGCAGAAGCTGCT
GGAGTTGAACAGAAGGAGTTGCAGCACCACTTGCATTTTGGTTGGTATTGCAGGGATGAG
CTTCTGAAAAGCACACGGTCCTTAGTCTTGTATTTGGCAAGAAACTACAGGGGGCTTGGA
GTGGCATTTGAAGACTTAATTCAGGCTGGGAACATGGGTGTGCTACAAGGTGCTGTAAGA
TTTGACGACACTAGGGGATACAAATTCTCAACTTACGTTCAGTATTGGATAAGAAAATCA
TTGTCAAAATTGGTGGCCCAGCATGCTAGAGGGATCCGAATTCCCTTCACTATATGCAAA
GCAATAAATCAAATACATAAGGCTCGAAAAGCTCTCAGTAGGAGCCATGGAAAATTTCCA
GGTGATAATGAAATTGCCAAGTACACGGGTCTATCTACGGCTAGGATTGCAATGGCTAGT
AAATGTCTGAGAGTTGTGGGTTCAATTGATCAGAAAGTTGGACATTGCATCAGTGCAAAA
GTTTTGGAACTCACACCAGATAAATCAATTGTAAGCCCGGAGGAAACTGTCATTAGGGAA
GACATAATAGACAACATGTATGCTCTTTTGGAAAGCTTGGATCCAAAAGAGCAGCAAGTA
ATATATTTTAGGTTTGGTCTTGAAAATCATCAGCGCAAATCCCTCGAGGAGATTGGGAGG
CTTTATGGAGTAAGTAAAGAGTGGATTAGGAGAATAGAACGAAGAGCTCTCACAAAATTG
AGAAGCGCGGATTGTTTCCAAGATTTAACTCATTACTCTGTATAG

Peptide Sequence

PEP ID

XP_016482950.1
PEP Infomation

PREDICTED: RNA polymerase sigma factor sigC-like isoform X2 [Nicotiana tabacum]
Sequence

MGFRLHLKWGFSVQPPFSSNSSAWPSSHSFKGKEALYDPARSLKPFINGDCEPSHSDPFR
VRTCLSDPQLWTSDISVTTEIKTRIGRGSPSNIYGDIGSDKTGISPDGEKPSYLSTTRAP
HFSLLMKNIDLLENMFADSEMSRLENDILVQLEKLGALEFFHSRLSRTLHSTSPEVLDVP
RELVEEIEKDDLVGNGIDKVVVRSRKKQERNSRRNRASGIANDIITVHPHTKNIQEDMQQ
PKFYSGKRTHASRNKRQKIAKNEAEMSRGVKLVAELERIRSILEEETGRVASFSSWAEAA
GVEQKELQHHLHFGWYCRDELLKSTRSLVLYLARNYRGLGVAFEDLIQAGNMGVLQGAVR
FDDTRGYKFSTYVQYWIRKSLSKLVAQHARGIRIPFTICKAINQIHKARKALSRSHGKFP
GDNEIAKYTGLSTARIAMASKCLRVVGSIDQKVGHCISAKVLELTPDKSIVSPEETVIRE
DIIDNMYALLESLDPKEQQVIYFRFGLENHQRKSLEEIGRLYGVSKEWIRRIERRALTKL
RSADCFQDLTHYSV

Transcript Sequence

Gene sequence data has not been registered.